virSEAK JSI's SARS-CoV-2 tool
Analyze NGS Data / Mutation Surveillance
enabled by data from GISAID
Country Isolates Known Lin. New Lin. Variants
Country Isolates Known Lin. New Lin. Variants
1 2 K 4 K 6 K 8 K 10 K 12 K 14 K 16 K 18 K 20 K 22 K 24 K 26 K
0% 10% 20% 30% 40% 50%
Virus Features
ORF
Gene
5'/3' UTR
mat. peptide
stem loop
Variant Statistics over all isolates
AA change
no AA change
relevant for type
Frequency: %
enabled by data from GISAID
Examples:
Alert
None
Pangolin
Lineage : Status :
Conflicts : Note :
Ambiguity Score : Pangolin version :
Scorpio Call : PangoLEARN version :
Scorpio Support : Pango version :
Scorpio Conflict :
GISAID
GISAID Clade :
 
 
 
 
 

Variants in analyzed sequence:

Position Nuc change AA change Variant Type Gene Affected mat. peptides Protein ID Count Frequency %
Sequence length :
Variants :
A :
T :
Others :
G :
C :

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